Index

_

__getitem__() (PNMF.custom_modules.ConstrainedParameter method) __init__() (PNMF.custom_modules.ConstrainedParameter method) (PNMF.custom_modules.PositiveParameter method) (PNMF.models.PoissonFactorization method) (PNMF.PNMF method) (PNMF.priors.GaussianPrior method)

C

clone() (PNMF.custom_modules.ConstrainedParameter method) components_ (PNMF.PNMF attribute) ConstrainedParameter (class in PNMF.custom_modules)

contiguous() (PNMF.custom_modules.ConstrainedParameter method) cpu() (PNMF.custom_modules.ConstrainedParameter method) cuda() (PNMF.custom_modules.ConstrainedParameter method)

D

D (PNMF.models.PoissonFactorization attribute) data (PNMF.custom_modules.ConstrainedParameter property) detach() (PNMF.custom_modules.ConstrainedParameter method)

device (PNMF.custom_modules.ConstrainedParameter property) dim() (PNMF.custom_modules.ConstrainedParameter method) double() (PNMF.custom_modules.ConstrainedParameter method) dtype (PNMF.custom_modules.ConstrainedParameter property)

E

elbo_ (PNMF.PNMF attribute)

F

factor_samples() (in module PNMF.transforms) factor_uncertainty() (in module PNMF.transforms) factors_from_prior() (in module PNMF.transforms) fit() (PNMF.PNMF method) fit_transform() (PNMF.PNMF method)

float() (PNMF.custom_modules.ConstrainedParameter method) forward() (PNMF.models.PoissonFactorization method) (PNMF.priors.GaussianPrior method) forward_batched() (PNMF.priors.GaussianPrior method) freeze() (PNMF.custom_modules.ConstrainedParameter method)

G

GaussianPrior (class in PNMF.priors) get_loadings() (in module PNMF.transforms)

get_prior() (in module PNMF.transforms) get_rate() (PNMF.models.PoissonFactorization method) grad (PNMF.custom_modules.ConstrainedParameter property)

H

half() (PNMF.custom_modules.ConstrainedParameter method)

I

initialize_factors() (in module PNMF.initialization) inverse_transform() (PNMF.PNMF method)

is_cuda (PNMF.custom_modules.ConstrainedParameter property) is_leaf (PNMF.custom_modules.ConstrainedParameter property)

L

L (PNMF.models.PoissonFactorization attribute) loadings_mode (PNMF.models.PoissonFactorization attribute)

log_factors() (in module PNMF.transforms) log_factors_from_prior() (in module PNMF.transforms)

M

mean (PNMF.priors.GaussianPrior attribute)

multiplicative_update() (PNMF.custom_modules.PositiveParameter method)

N

N (PNMF.models.PoissonFactorization attribute) n_components_ (PNMF.PNMF attribute) n_features_in_ (PNMF.PNMF attribute)

n_iter_ (PNMF.PNMF attribute) natural_parameters() (PNMF.priors.GaussianPrior method) numel() (PNMF.custom_modules.ConstrainedParameter method) numpy() (PNMF.custom_modules.ConstrainedParameter method)

P

parameters() (PNMF.priors.GaussianPrior method) PNMF (class in PNMF) PoissonFactorization (class in PNMF.models) PositiveParameter (class in PNMF.custom_modules)

prior (PNMF.models.PoissonFactorization attribute) project() (PNMF.custom_modules.ConstrainedParameter method) (PNMF.custom_modules.PositiveParameter method) project_parameters() (PNMF.models.PoissonFactorization method)

R

raw (PNMF.custom_modules.ConstrainedParameter property)

requires_grad (PNMF.custom_modules.ConstrainedParameter property)

S

scale (PNMF.priors.GaussianPrior attribute) scale_pf (PNMF.priors.GaussianPrior attribute)

shape (PNMF.custom_modules.ConstrainedParameter property) size() (PNMF.custom_modules.ConstrainedParameter method)

T

theta1 (PNMF.priors.GaussianPrior attribute) theta2 (PNMF.priors.GaussianPrior attribute) to() (PNMF.custom_modules.ConstrainedParameter method)

transform() (PNMF.PNMF method) transform_F() (in module PNMF.transforms) transform_W() (in module PNMF.transforms)

U

uncertainty_from_prior() (in module PNMF.transforms)

unfreeze() (PNMF.custom_modules.ConstrainedParameter method) use_natural_gradients (PNMF.priors.GaussianPrior attribute)

W

W (PNMF.models.PoissonFactorization attribute)